I know that this thread is a week old, but for people having similar problems:
If you're running Linux then there's pretty much nothing you can do. I was recently having this problem until I switched to Windows. Here's a message from my host (Nuclear Fallout).
Quote:
We have heard multiple complaints about problems with Steam games on Linux disconnecting clients and having strange delays every few minutes. From our analysis and reports of others on the Linux Half-life mailing list, this appears to be an internal problem with Steam that Valve will need to fix, likely with one of their authentication servers.
If you would like for us to move your server to a Windows machine temporarily, please contact us.
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